PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30098
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family CO-like
Protein Properties Length: 312aa    MW: 34420.5 Da    PI: 5.3542
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-085095342
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               r+C+++e+ ++ l C+ +   lC  C  + H+       H++vp+
  EMT30098 50 VRVCETCESAPAVLACHADAAALCTACDAQVHSAnpiaqrHQRVPV 95
              689*****************************66899999999986 PP

2CCT24.87.9e-10282303122
       CCT   1 ReaallRYkeKrktRkFeKkir 22 
               Rea++lRYkeK++tRkF+K+ir
  EMT30098 282 REARVLRYKEKKQTRKFQKTIR 303
               9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-124895IPR000315B-box-type zinc finger
PROSITE profilePS5011911.224895IPR000315B-box-type zinc finger
PfamPF006434.9E-75095IPR000315B-box-type zinc finger
CDDcd000212.68E-95195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVGSWDMLFS DVSLAVMLLT PAHSTELPQQ HAGTIMVHSA NRVASRHERV RVCETCESAP  60
AVLACHADAA ALCTACDAQV HSANPIAQRH QRVPVLPLPA VAIPAASGFA EAEASVTAHG  120
DKEEGEEVDS WLLRRNSDDN NCANKIDRYY NLVGYNMYYD NITCDPRPEE QYRMQEQHVQ  180
NRYIEKEGCE CVVPPQVVMA SEQQESDYGT IGAGQAASVT AMTSTYTASI SNDISFSSME  240
VGIVPDNSRP DISNSNILTS SEAMELSGHS LQMPVHFSSM DREARVLRYK EKKQTRKFQK  300
TIRSNISDLR GH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0944910.0AB094491.1 Triticum aestivum TaHd1-3 mRNA for Hd1-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570457.11e-150PREDICTED: zinc finger protein HD1-like
SwissprotQ9FDX85e-74HD1_ORYSJ; Zinc finger protein HD1
TrEMBLM8C7P60.0M8C7P6_AEGTA; Uncharacterized protein
STRINGBRADI3G56260.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.13e-33CONSTANS-like 2